blastp
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Blastp Command: Align Sequences Custom Tabular Output
Use for align sequences custom tabular output with Blastp. Exact CLI syntax to align sequences custom tabular output using Blastp.
When to use this: Use for align sequences custom tabular output with Blastp.
Command Syntax
blastp -query <query.fa> -subject <subject.fa> -outfmt '<6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident>' -out <output.tsv>blastp -query <query.fa> -subject <subject.fa> -outfmt '<6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident>' -out <output.tsv>Live Command Builder
Final Command
blastp -query <query.fa> -subject <subject.fa> -outfmt '<6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident>' -out <output.tsv> Command Breakdown
-query- Command Option
- Tool-specific option used by this command invocation.
-subject- Command Option
- Tool-specific option used by this command invocation.
-outfmt- Command Option
- Tool-specific option used by this command invocation.
-out- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to align sequences custom tabular output using Blastp.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
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Related Operations
Blastp Command: Align Sequences Blastp Fast
blastp -task blastp-fast -query <query.fa> -subject <subject.fa> Blastp Command: Align Sequences Evalue Output Screen blastp -query <query.fa> -subject <subject.fa> -evalue <1e-9> Blastp Command: Display Help blastp -h Blastp Command: Search Protein Database With Threads blastp -query <query.fa> -db <blast_database_name> -num_threads <16> -max_target_seqs <10> Blastp Command: Search Remote Nr Database blastp -query <query.fa> -db <nr> -remote