compseq
Verified for current stable LTS
Compseq Commands
Compseq command syntax with verified terminal examples.
Commands
8 commands for Compseq
compseq Operations
Compseq Command: Approximate Codon Frequencies Calculate Expected
compseq -sequence <path/to/human_proteome.fasta> -word 3 <path/to/output_file.comp> -nozero -calcfreq compseq Operations
Compseq Command: Count Amino Acid Pairs Frequencies
compseq <path/to/input_protein.fasta> -word 2 <path/to/output_file.comp> compseq Operations
Compseq Command: Count Amino Acid Triplets Compare Previous Run
compseq -sequence <path/to/human_proteome.fasta> -word 3 <path/to/output_file1.comp> -nozero -infile <path/to/output_file2.comp> compseq Video
Compseq Command: Count Codons Frame Shifted By Three
compseq -sequence <path/to/input_rna.fasta> -word 3 <path/to/output_file.comp> -nozero -frame 3 compseq Video
Compseq Command: Count Codons Reading Frame Ignore Overlaps
compseq -sequence <path/to/input_rna.fasta> -word 3 <path/to/output_file.comp> -nozero -frame <1> compseq Operations
Compseq Command: Count Hexanucleotides Frequencies Ignore Zero
compseq <path/to/input_dna.fasta> -word 6 <path/to/output_file.comp> -nozero compseq Operations
Compseq Command: Count Word Frequencies Fasta
compseq <path/to/file.fasta> compseq Operations
Compseq Command: Display Help Info
compseq -help Suggest a Compseq Command
Submit missing workflows, corrections, or verified alternatives for this tool.
FAQ
Coverage: Focused examples for common Compseq workflows.
Verified version: current stable LTS.
Verification: Test commands in a disposable workspace and submit notes for edge cases.