mashtree

Verified for current stable LTS

Mashtree Commands

Mashtree command syntax with verified terminal examples.

Commands

3 commands for Mashtree

mashtree Archive

Mashtree Command: Bootstrap Confidence Tree Creation Mashtree Linux

mashtree_bootstrap.pl --reps <100> --numcpus <12> <*.fastq.gz> -- --min-depth <0> > <mashtree.bootstrap.dnd>

mashtree Archive

Mashtree Command: Fastest Tree Creation Mashtree Linux

mashtree --numcpus <12> <*.fastq.gz> <*.fasta> > <mashtree.dnd>

mashtree Archive

Mashtree Command: Most Accurate Tree Creation Mashtree Linux

mashtree --mindepth <0> --numcpus <12> <*.fastq.gz> <*.fasta> > <mashtree.dnd>

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FAQ

Coverage: Focused examples for common Mashtree workflows.

Verified version: current stable LTS.

Verification: Test commands in a disposable workspace and submit notes for edge cases.