nextclade
Verified for current stable LTS
Nextclade Command: Try Reverse Complement If Sequence Not Align
Use for try reverse complement if sequence not align with Nextclade. Exact CLI syntax to try reverse complement if sequence not align using Nextclade.
When to use this: Use for try reverse complement if sequence not align with Nextclade.
Command Syntax
nextclade run --retry-reverse-complement -d <dataset_name> -t <path/to/output_tsv> <path/to/input_fasta>nextclade run --retry-reverse-complement -d <dataset_name> -t <path/to/output_tsv> <path/to/input_fasta>Live Command Builder
Final Command
nextclade run --retry-reverse-complement -d <dataset_name> -t <path/to/output_tsv> <path/to/input_fasta> Command Breakdown
--retry-reverse-complement- Command Option
- Tool-specific option used by this command invocation.
-d- Command Option
- Tool-specific option used by this command invocation.
-t- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to try reverse complement if sequence not align using Nextclade.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
Improve This Command
Suggest a correction, safer default, or version-specific note for this entry.
Related Operations
Nextclade Command: Align Sequences To Reference Output Alignment
nextclade run <path/to/sequences.fa> -r <path/to/reference.fa> -o <path/to/alignment.fa> Nextclade Command: Create Tsv Report Auto Download Dataset nextclade run <path/to/fasta> -d <dataset_name> -t <path/to/report.tsv> Nextclade Command: Download Latest Sars Cov 2 Dataset nextclade dataset get -n sars-cov-2 -o <path/to/directory> Nextclade Command: List Available Datasets nextclade dataset list Nextclade Command: Run On Multiple Files nextclade run -d <dataset_name> -t <path/to/output_tsv> -- <path/to/input_fasta_1 path/to/input_fasta_2 ...>