nextclade
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Nextclade Command: Use Downloaded Dataset Produce All Outputs
Use for use downloaded dataset produce all outputs with Nextclade. Exact CLI syntax to use downloaded dataset produce all outputs using Nextclade.
When to use this: Use for use downloaded dataset produce all outputs with Nextclade.
Command Syntax
nextclade run -D <path/to/dataset_directory> -O <path/to/output_directory> <path/to/sequences.fasta>nextclade run -D <path/to/dataset_directory> -O <path/to/output_directory> <path/to/sequences.fasta>Command Breakdown
-D- Command Option
- Tool-specific option used by this command invocation.
-O- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to use downloaded dataset produce all outputs using Nextclade.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
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Related Operations
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nextclade run <path/to/sequences.fa> -r <path/to/reference.fa> -o <path/to/alignment.fa> Nextclade Command: Create Tsv Report Auto Download Dataset nextclade run <path/to/fasta> -d <dataset_name> -t <path/to/report.tsv> Nextclade Command: Download Latest Sars Cov 2 Dataset nextclade dataset get -n sars-cov-2 -o <path/to/directory> Nextclade Command: List Available Datasets nextclade dataset list Nextclade Command: Run On Multiple Files nextclade run -d <dataset_name> -t <path/to/output_tsv> -- <path/to/input_fasta_1 path/to/input_fasta_2 ...>