nextflow
Verified for current stable LTS
Nextflow Commands
Nextflow command syntax with verified terminal examples.
Commands
8 commands for Nextflow
nextflow HTTP
Nextflow Command: List All Downloaded Projects
nextflow list nextflow Operations
Nextflow Command: Pull Latest Version Of Remote Workflow From Bitbucket
nextflow pull <user/repo> -hub bitbucket nextflow Operations
Nextflow Command: Remove Cache And Intermediate Files For Specific Run
nextflow clean -force <run_name> nextflow Operations
Nextflow Command: Run Pipeline Resume Cached Results
nextflow run <main.nf> -resume nextflow Operations
Nextflow Command: Run Pipeline With Specific Work Directory And Report
nextflow run <workflow> -work-dir <path/to/directory> -with-report <report.html> nextflow Operations
Nextflow Command: Run Remote Workflow Specific Release
nextflow run <user/repo> -revision <release_tag> nextflow Operations
Nextflow Command: Show Details Of Previous Runs
nextflow log nextflow Operations
Nextflow Command: Update Nextflow
nextflow self-update Suggest a Nextflow Command
Submit missing workflows, corrections, or verified alternatives for this tool.
FAQ
Coverage: Focused examples for common Nextflow workflows.
Verified version: current stable LTS.
Verification: Test commands in a disposable workspace and submit notes for edge cases.