bcftools
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Bcftools Command: Add Annotated Columns From Tabix Indexed Table
Use for add annotated columns from tabix indexed table with Bcftools. Exact CLI syntax to add annotated columns from tabix indexed table using Bcftools.
When to use this: Use for add annotated columns from tabix indexed table with Bcftools.
Command Syntax
bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz>bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz>Command Breakdown
-a- Command Option
- Tool-specific option used by this command invocation.
-c- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to add annotated columns from tabix indexed table using Bcftools.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
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Related Operations
Bcftools Command: Add Annotated Columns From Table
bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz> Bcftools Command: Annotate Vcf bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz> Bcftools Command: Concat Vcf bcftools concat <path/to/chr1.vcf.gz path/to/chr2.vcf.gz ...> -O z Bcftools Command: Concatenate Sorted Vcf Files bcftools concat <path/to/chr1.vcf.gz path/to/chr2.vcf.gz ...> -O z Bcftools Command: Concatenate Sorted Vcf Files To Zipped Vcf bcftools concat <path/to/chr1.vcf.gz path/to/chr2.vcf.gz ...> -O z