bcftools
Verified for current stable LTS
Bcftools Command: Add Annotated Columns From Table
Use for add annotated columns from table with Bcftools. Exact CLI syntax to add annotated columns from table using Bcftools.
When to use this: Use for add annotated columns from table with Bcftools.
Command Syntax
bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz>bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz>Command Breakdown
-a- Command Option
- Tool-specific option used by this command invocation.
-c- Command Option
- Tool-specific option used by this command invocation.
FAQ
Purpose: Exact syntax to add annotated columns from table using Bcftools.
Test path: Replace placeholders and run destructive commands in a disposable workspace first.
Flag behavior: Tool version, platform, and shell can change behavior.
Improve This Command
Suggest a correction, safer default, or version-specific note for this entry.
Related Operations
Bcftools Command: Add Annotated Columns From Tabix Indexed Table
bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz> Bcftools Command: Annotate Vcf bcftools annotate -a <path/to/annotations.tsv.gz> -c CHROM,POS,REF,ALT,INFO/AF <path/to/input.vcf.gz> Bcftools Command: Concat Vcf bcftools concat <path/to/chr1.vcf.gz path/to/chr2.vcf.gz ...> -O z Bcftools Command: Concatenate Sorted Vcf Files bcftools concat <path/to/chr1.vcf.gz path/to/chr2.vcf.gz ...> -O z Bcftools Command: Concatenate Sorted Vcf Files To Zipped Vcf bcftools concat <path/to/chr1.vcf.gz path/to/chr2.vcf.gz ...> -O z